Name of server-side packages
Name of client-side packages
Date this information was late updated/checked
Description of packages purpose
- Differential expression analysis (RNAseq/microarray data):
- Voom + Limma
- PCA of SNPs
- HWE test
- Allele frequencies
- Single SNP GLM
How to contact developer institution/team/individual
Yannick Marcon (firstname.lastname@example.org)
Xavier Escribà-Montagut (email@example.com)
Juan Ramón González (firstname.lastname@example.org)
Type distribution licence
MIT + file LICENSE
Methods of obtaining package
What versions of R work with the package?
server ≥ 3.6.0
client ≥ 4.0.0
What R packages do the packages depend on?
resourcer (≥ 1.1.1)
SNPRelate (≥ 1.26.0)
MEAL (≥ 1.22.0)
Rcpp (≥ 1.0.7)
The package is still a work in progress. The current version is already being used “in production” to perform analysis on ExpressionSets of the LifeCycle project. This production version is being debugged by their input.
Being tested at the moment, with some previous testing already conducted.
Yes, vignettes listed on the GitHub repository README
Is the package suitable for deployment in the production environment? (Yes/No)
Yes although some bugs may be expected.
Does your package have features to protect the privacy of data, or does it just provide remote analysis functionality?
Yes, the results returned to the client are passed through filters or dsBase functions are used, which also have protection built to them. Nevertheless we may have missed some sensible elements, it is a work in progress.